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visium human breast cancer dataset  (10X Genomics)

 
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    10X Genomics visium human breast cancer dataset
    Visium Human Breast Cancer Dataset, supplied by 10X Genomics, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/visium+breast+cancer+datasets/breast+cancer+human/bio_rxiv__64898__2026__05__01__722104-202-1-21
    Average 86 stars, based on 1 article reviews
    visium human breast cancer dataset - by Bioz Stars, 2026-09
    86/100 stars

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    Related Articles

    other:

    Article Title: Benchmarking the translational potential of spatial gene expression prediction from histology
    Article Snippet: The two Visium breast cancer datasets were obtained from the 10x Genomics platform, measuring breast tissue from BioIVT Asterand.

    Article Title: Benchmarking the translational potential of spatial gene expression prediction from histology.
    Article Snippet: The two Visium breast cancer datasets were obtained Nature Communications | (2025) 16:1544 11 from the 10x Genomics platform, measuring breast tissue from BioIVT Asterand.



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    a Spatial annotation of the dataset, including labeled regions (left), aggregated compartments (middle), and the matched H&E image (right). Each spot has a diameter of approximately 55 μm, as specified by <t>10x</t> Genomics. b Top row: spatial expression of the ligand TGFB1 and its cognate receptors TGFBR2 , TGFBR1 and ACVR1B . Bottom row: total received signals predicted by SCILD for L-R pairs TGFB1- > TGFBR2, TGFB1- > TGFBR1, and TGFB1- > ACVR1B. c Same as ( b ) for the receptor ERBB2 and its cognate ligands HBEGF , AREG , and TGFA .
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    Image Search Results


    a Spatial annotation of the dataset, including labeled regions (left), aggregated compartments (middle), and the matched H&E image (right). Each spot has a diameter of approximately 55 μm, as specified by 10x Genomics. b Top row: spatial expression of the ligand TGFB1 and its cognate receptors TGFBR2 , TGFBR1 and ACVR1B . Bottom row: total received signals predicted by SCILD for L-R pairs TGFB1- > TGFBR2, TGFB1- > TGFBR1, and TGFB1- > ACVR1B. c Same as ( b ) for the receptor ERBB2 and its cognate ligands HBEGF , AREG , and TGFA .

    Journal: Communications Biology

    Article Title: Advancing spatial cellular communication inference with ligand diffusion and transport model

    doi: 10.1038/s42003-025-09413-w

    Figure Lengend Snippet: a Spatial annotation of the dataset, including labeled regions (left), aggregated compartments (middle), and the matched H&E image (right). Each spot has a diameter of approximately 55 μm, as specified by 10x Genomics. b Top row: spatial expression of the ligand TGFB1 and its cognate receptors TGFBR2 , TGFBR1 and ACVR1B . Bottom row: total received signals predicted by SCILD for L-R pairs TGFB1- > TGFBR2, TGFB1- > TGFBR1, and TGFB1- > ACVR1B. c Same as ( b ) for the receptor ERBB2 and its cognate ligands HBEGF , AREG , and TGFA .

    Article Snippet: The 10x Visium Human Breast Cancer dataset was downloaded from https://www.10xgenomics.com/datasets/human-breast-cancer-block-a-section-1-1-standard-1-1-0 and denoised using Sprod ( https://github.com/yunguan-wang/SPROD ) .

    Techniques: Labeling, Expressing